Klebsiella Pneumoniae Producing Extended-Spectrum Β-Lactamases seen in the Laboratory of the University Hospital of Befelatanana Antananarivo Madagascar

Fidiniaina Mamy Randriatsarafara¹, Zafindrasoa Domoina Rakotovao-Ravahatra^2*, Njaramahery Williame Andriamampandry³, Andriamiadana Luc Rakotovao⁴

¹Public Health Specialist. Public Health Department of the Faculty of Medicine Antananarivo, Madagascar

²Biologist doctor. Laboratory of Joseph Raseta Befelatanana University Hospital Antananarivo, Madagascar

³Medical Student. Laboratory of Joseph Raseta Befelatanana University Hospital Antananarivo, Madagascar

⁴Professor in biological hematology. Medical Biology Department of the Faculty of Medicine Antananarivo, Madagascar

^*Corresponding Author: Zafindrasoa Domoina Rakotovao-Ravahatra, Laboratory of Joseph Raseta Befelatanana University Hospital Antananarivo, Madagascar

Received: 21 September 2021; Accepted: 27 September 2021; Published: 06 October 2021

1. Introduction

Over the four past decades, the worldwide spread of extended-spectrum β-lactamases Enterobacterales has become a significant threat [1-3]. The recent emergence of carbapenem-resistant Enterobacterales has further restricted antimicrobial treatment options and has amplified the threat to public health [4]. Carbapenem-resistant and extended-spectrum β-lactamases-producing Enterobacterales are in the WHO priority pathogens list for research and development of new antibiotics [5]. Among Enterobacterales, K. pneumonia producing extended-spectrum β-lactamases (ESBL-Kp) is an important nosocomial pathogen with the potential to cause serious infectious diseases such as bacteremia and pneumonia [6-8]. Recently multi-drug-resistant K. pneumoniae emergence has led to incurable infections [9-12]. In the last 15 years, the proportion of K. pneumoniae isolates from bloodstream infections resistant to third-generation cephalosporins increased from 4% (in 2005) to 29% (in 2017) with more than 80% of this resistance being due to ESBL production [13]. On the other hand the proportion of carbapenem-resistant K. pneumoniae was to 1% in 2019 [14]. In order to improve the management of K. pneumoniae infections, the objective of this study is to describe the factors associated with ESBL-Kp infections in hospitals.

2. Materials and Methods

2.1 Type of study

It is a prospective study of 113 isolates of K. pneumonia for a period of 18 months from January 2020 to June 2021 in the laboratory of the University Hospitals of Befelatanana.

2.2 Inclusion and exclusion criteria

This study includes all patients who have applied for a bacteriological examination during the study period with bacterial K.pneumoniae infections. This study excluded non-compliant samples during the study and patients with bacterial infections other than K.pneumoniae infections.

2.3 Study variables

The dependent variable was constituted by the positivity of the microbiological culture identifying ESBLs- producing K. pneumoniae in an antibiogram. The independent variables were constituted by the associated factors with K. pneumoniae infections.

2.4 Sample collection

Samples were collected in sterile vials (stool, urine and respiratory samples), swabs (pus), sterile tube (pleural fluid, ascites fluid, cerebrospinal fluid and other fluids) or blood culture bottles. The samples were transported quickly to the laboratory (less than 2 hours of transport) at room temperature.

2.5 Bacterial culture

Specific culture media were used according to each type of sample (for examples: blood agar, chocolate agar, brain heart broth….), associated with a chromogenic culture medium (Uriselect^® supplied by Bio-Rad company) to specifically identify the enterobacteria.

2.6 Bacterial identification

When Klebsiella colonies grew in uriselect^® agar, they were identified by colony color (dark blue), microscopic appearances after gram staining (gram negative bacilli) and identification test results. The specific identification tests for Klebsiella were the oxidase test (negative) and the Api 20E^® strips (manufactured by bioMérieux company). These strips were identified the species K. pneumonia.

2.7 Antibiotic resistance test

For the antibiogram, discs of antibiotics (brand OXOID^® supplied by Termo Fisher Scientific company) were used. Resistance to antibiotics was determined by the Mueller / Hinton agar diffusion method, according to the recommendations of the “comité de l'antibiogramme de la société française de Microbiologie”(Société Française de Microbiologie, 2019) [15]. Mueller / Hinton agar were provided by Rapid Labs Company. The detection of ESBLs was carried out by a method of synergy between the clavulanic acid of the AMC and ceftriaxone or else cefotaxime, characterized by a“champagne cork” image and signs the presence of an ESBLs [16]. Study parameters were the gender, the age, the clinical information, the departments, the types of sampling and the seasons.

2.8 Ethical considerations

This study was authorized by the Director of Establishment and Department Head of laboratory of the University Hospital of Befelatanana before its implementation. Notion of anonymity and confidentiality were respected.

2.9 Statistical analysis

The data entry and processing was performed on the software Epi-info 3.5.2. The comparison of percentages used the Chi-square tests. The statistical significance threshold used was p = 0.05.

3. Results

Among 113 isolates of K.pneumoniae, 78 (69%) were represented by ESBL-Kp (Figure 1).

Figure 1: Microbiological results of bacteriological cultures.

Table 1: Associated factors with ESBL-Kp infections.

Men (79.3%;p=0.01), subjects less than 20 years (85.2%; p=0.001), and with infectious syndrome (77.9%; p= 0.002) were the most affected by ESBL-Kp infections. Among these subjects, newborns hospitalized in intensive care units (75%;p=0.01) were the most affected by these infections. Moreover, these infections were more common in summer (69.1%; p=10^-2) (Table 1).

4. Discussion

ESBLs induce bacterial resistance by hydrolyzing penicillins, first, second, and third generation cephalosporins and aztreonam, but not cephamycins or carbapenems. β -lactamase inhibitors such as, clavulanic acid, sulbactam, and tazobactam usually inhibit them. Most ESBLs are derived from broad-spectrum β -lactamases TEM-1 and SHV-1. Mutations of these genes result in alteration of the amino acid configuration around the active site of β -lactamases. Genes for ESBL are frequently encoded by plasmids [17]. Several class of ESBLs have been described in K. pneumoniae. ESBLs that derived from penicillinases TEM and SHV emerged in the 1980s and CTX-M type enzymes such as CTX-M-15 have arisen during the 2000s [18]. This change reflects an important capacity for gene transfer, possibly between epidemic clones [19-21]. The pandemic clones ST258, ST11, ST15, and ST147 spread since two decades and recently, the CTX-M-15-producing ST307 clone emerged globally [22]. Most hospital outbreaks are due to this multidrug-resistant K. pneumoniae clones [22-24]. The emergence of carbapenem-resistant strains further complicates the management of these infections [25].

This study showed 69% isolates of ESBL-Kp. This rate is low compared to that of a study in Côte d’Ivoire which found 84% of ESBL-Kp [26]. Indeed, not all patients with bacterial infections have laboratory tests explaining the lower rate compared to this study. Moreover, this rate is high compared to that of a study in Tunisia which found 20.2% of ESBL-Kp [27]. This study showed that more than half of the K. pneumoniae isolates were ESBL-Kp thus representing multi-resistant bacteria. And all these bacteria have been found in hospital patients. In France, K. pneumoniae is the 5th most prevalent pathogen responsible for healthcare-associated infection [28]. In the last 15 years, the proportion of K. pneumoniae isolates from bloodstream infections resistant to third-generation cephalosporins increased from 4% (in 2005) to 29% (in 2017) with more than 80% of this resistance being due to ESBL production [29]. On the other hand the proportion of carbapenem-resistant K. pneumoniae was to 1% in 2019 [30]. This situation is worrying and health workers should take strict measures to limit the spread of these multi-resistant bacteria.

Concerning the associated factors with ESBL-Kp infections, men were the most affected with a significant difference. Men are more likely to work outside the home compared to women and are more exposed to pathogens, probably explaining this difference. The infectious syndrome was the most frequent clinical information in patients because ESBL bacteria are very resistant and the infection always manifests itself by more or less marked symptoms. Subjects less than 20 years in particular children and newborns hospitalized in intensive care units were the most affected by these infections representing 75% of cases. According to a study carried out in Kazan, in neonates with sepsis, testing of K. pneumoniae isolates for ESBL production was positive in 60% of cases and in neonates with UTI-in 40% of cases [31].The prevalence of virulent strains of K. pneumoniae among neonates with sepsis and other neonatal infection is higher than we think. The most severe forms of neonatal sepsis with an unfavorable outcome were due to virulent strains of K. pneumoniae. According to a study carried out by Naas et al in Madagascar, neonates are exposed to external risks factors, particularly deficient hygiene that put them at high risk of neonatal infection and if neonatal culture confirmed sepsis rates is of 1-3 per 1000 live births reported from industrialized countries, this rate can reached 37 per 1000 live births in developing countries. Poor quality of care in developing countries are a major source of neonatal infections for hospital-born infants. Lack of infection-control procedures, inadequate sterilization of multiuse instruments, understaffing and overcrowded nurseries are responsible for nosocomial infections in most hospitals in developing countries and promotes neonatal infections due to environmental pathogens as reflected in this study by the positivity of the gastric samples cultures with E. cloacae and K. pneumonia [32].

Moreover, these infections were more common in summer in this study. Another study also showed that ESBL bacteria are more common in summer than in winter [33]. This is logical since the majority of bacteria only grow during incubation at 37 °C in an incubator in the laboratory. Thus, their growth is favorable at a high temperature.

At the end of this article, we recommend improving hygiene measures in hospital services, especially neonatal intensive care units, in order to fight against the spread of these ESBL-Kp. Likewise, bacteriological examinations in the laboratory should be carried out as much as possible, especially during the summer when bacteria grow more rapidly.

5. Conclusion

This study highlighted the high rate of ESBL-Kp in hospitals, especially in neonatal intensive care units. Men were more exposed compared to women probably because of their work. And these infections were more common in the summer. Thus, hygiene measures should be improved in inpatient and neonatal intensive care units. Likewise, bacteriological examinations with antibiogram should be carried out quickly in case of suspicion of bacterial infection to ensure rapid management in order to improve the life expectancy of patients.

Acknowledgements

We would like to thank all the staff of the laboratory of University Hospital of Befelatanana and all the laboratory technicians. Similarly, we would like to express our gratitude to the director of establishment for authorizing us to carry out this study.

Conflicts of Interest

The authors do not declare any conflict of interest.

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